Publications

Kopp, A. (2009). Metamodels and phylogenetic replication: A systematic approach to the evolution of developmental pathways. Evolution (in press) PDF

Matsuda, M., Ng, C.-S., Doi, M., Kopp, A. and Tobari, Y. (2009). Evolution in the Drosophila ananassae species subgroup. Fly 3 (2): 1-13. PDF

Tanaka, K., Barmina, O., and Kopp, A. (2009). Distinct developmental mechanisms underly the evolutionary diversification in Drosophila: sex combs. PNAS 106: 4764-4769 PDF

Telonis-Scott, M. Kopp, A. Wayne, M.L., Nuzhdin, S.V., and McIntyre, L.M. (2009). Sex-specific splicing in Drosophila: Widespread occurance, tissue-specificity, and evolutionary conservation. Genetics 181: 421-434. PDF

Ng, C.-S., Hamilton, A.M., Frank, A., Barmina, O., and Kopp, A. (2008). Genetic Basis of sex-specific color patterns in Drosophila malerkotliana. Genetics 180: 421-429 PDF

Williams, T.M., Selegue, J., Werner, T., Gompel, N., Kopp, A., and Carrol, S.B. (2008). The regulation and evolution of a genetic switch controlling sexually dimorphic traits in Drosophila. Cell 134: 610-623 PDF

Ng, C.-S., and Kopp, A. (2008). Sex combs are important for male mating success in Drosophila melanogaster. Behav Genet 38: 195-201 PDF

Kopp, A., Barmina, O., Hamilton, A. Higgins, L., and Jones, C. (2007). Evolution of gene expression in the Drosophila olfactory system. Mol Biolo Evol 25: 1081-1092 PDF

Wayne, M.L., Telonis-Scott, M., Bono, L., Harshman, L., Kopp, A., Nuzhdin, S.V., and McIntyre, L.M. (2007). Simpler mode of inheritence of transcriptional variation in male Drosophila melanogaster. PNAS 104: 18577-18582 PDF

Barmina, O. and Kopp, A. (2007). Sex-specific regulation of a HOX gene associated with rapid morphological evolution. Devel Biol 311: 277-286 PDF

McIntyre, L.M., Genissel, A. Wasterman, R.L., Bono, L., Telonis, M., Wayne, M.L., Harshman, L., Vacha, S., Kopp, A., and Nuzhdin, S.V. (2006). Sex-specific expression of alternative transcripts in Drosophila. Genome Biology 7:R79 PDF

Kopp, A. (2006). Basal relationships in the Drosophila melanogaster species group. Mol Phyl Evol 39:787-798 PDF

Kopp, A., Barmina, O., and Frank, A. (2006). Interspecific divergence and intrachomasomal recombination of Y-chromosomal genes in Drosophila. Mol. Phyl. Evol 38:731-741. PDF

Kopp, A., Frank, A., and Fu, J. (2005). Historical biogeography of Drosophila simulans based on Y-chromosomal sequences. Mol. Phyl. Evol 38:355-362. PDF

Seigel, A., Lee, S., and Kopp, A. (2005). Morphological markers in Drosophila malerkotliana and D. bipectinata. Drosophila Info Service 88. PDF

Barmina O., Gonzalo, M., McIntyre, L., Kopp, A. (2005). Sex- and segment-specific modulation of gene expression profiles in Drosophila. Developmental Biology 288: 528-544. PDF

Kopp, A., Barmina O. (2005). Evolutionary history of the Drosophila bipectinata species complex. Genet. Res., Camb. 85: 23-46. PDF

Kopp, A., Frank A. (2005). Speciation in progress? A continuum of reproductive isolation in Drosophila bipectinata species. Genetica 125:55-68. PDF

Kopp, A. (2004). Making a better worm. Nature Genetics 36: 213-214. PDF

Gibson, G., Riley-Berger, R., Harshman, L., Kopp, A., Vacha, S., Nuzhdin, S., Wayne, M. (2004).
        Extensive sex-specific non-additivity of gene expression in Drosophila melanogaster. Genetics 167: 1791-1799. PDF

Wittkopp, P. J., Carroll, S. B. and Kopp, A. (2003). Evolution in black and white: Genetic
        control of pigment patterns in Drosophila. Trends Genet. 19: 495-504. PDF

Kopp, A., Graze, R., Xu, S., Carroll, S. B. and S. Nuzhdin, 2003. Quantitative trait loci responsible
        for variation in sexually dimorphic traits in Drosophila melanogaster. Genetics 163: 771-787. PDF

Kopp, A. and J. True, 2002. Phylogeny of the Oriental Drosophila melanogaster species group: a
        multi-locus reconstruction. Syst. Biol. 51: 786-805. PDF

Kopp, A. and J. True, 2002. Evolution of male sexual characters in the Oriental Drosophila
        melanogaster species group. Evol. Devel 4: 274-291. PDF

Kopp, A. and I. Duncan, 2002. Anteroposterior patterning in adult abdominal segments of
        Drosophila. Devel. Biol. 242: 15-30. PDF

True, J. R., A. Kopp and S. B. Carroll, 2001. Prophenoloxidase as a reporter for analysis of gene
        expression in Drosophila. BioTechniques 30: 1004-9.

Kopp, A, I. Duncan, D. Godt and S. B. Carroll, 2000. Genetic control and evolution of sexually
        dimorphic characters in Drosophila. Nature 408: 553-559. PDF

Kopp, A., R. Blackman and I. Duncan, 1999. Wingless, Decapentaplegic and EGF Receptor
        signaling pathways interact to specify dorso-ventral pattern in the adult abdomen of Drosophila. Development 126:             3495-507. PDF

Kopp, A., M. A. T. Muskavitch and I. Duncan, 1997. The roles of hedgehog and engrailed in
        patterning the adult abdominal segments of Drosophila. Development 124, 3703-3714. PDF

Kopp, A. and I. Duncan, 1997. Control of cell fate and polarity in the adult abdominal segments of
        Drosophila by optomotor-blind. Development 124, 3715-3726. PDF